CCavallo_Thesis Appendix_NGS Bioinformatics pipeline 18s.Rmd
workflowposted on 28.04.2020 by Cathy Cavallo
Resource describing protocols, procedures, methods or activities part of a scientific experiment.
This code will allow the user to clean and organise their DNA sample library and then calculate measures of taxon abundance for analysis. Important steps include:
+ samples with less than 100 target reads
+ Non-target sequences
+ Specific samples (e.g. those that did not meet thresholds for inclusion, like CT)
* Producing group totals for higher taxonomic levels
* Calculating the frequency of occurrence (FOO) and relative read abundance (RRA) of items in the dataset
A top-down approach to ecosystem management using multivariate foraging strategies of an iconic marine top-predator
Australian Research CouncilFind out more...