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Extract linear plasmids from Unicycler assembly graphs
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posted on 2021-10-04, 07:09
authored by
Jane Hawkey
Jane Hawkey
Python code used to identify putative linear plasmids based on their assembly structure from assembly graphs output by Unicycler (requires the first graph produced, 001_best_spades_graph.gfa). Uses Python 3.
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Bioinformatics and computational biology not elsewhere classified
Applications in life sciences
Keywords
linear plasmid
assembly graph
python code
Bioinformatics Software
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CC BY 4.0
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