Supporting data for Robledo-Ruiz et al. (2023)
Supporting data for manuscript:
Robledo-Ruiz D. A., Austin L., Amos J. N., Castrejón-Figueroa J., Magrath M. J. L., Sunnucks P. & Pavlova A. (2023) Easy-to-use R functions to separate reduced-representation genomic datasets into sex-linked and autosomal loci, and conduct sex-assignment. Molecular Ecology Resources. https://doi.org/10.1111/1755-0998.13844
Data usage:
The three directories have the datasets and scripts for the eastern yellow robin (EYR), yellow-tufted honeyeater (YTH) and Leadbeater's possum (LBP), respectively.
*_Results.Rmd
R script to process outputs from 'standard regime' and 'removing sex-linked loci' regime.
filtering_regime_using_filter.sex.linked
Folder with the script and input data required for 'Removing sex-linked loci' filtering regime.
filtering_regime_notusing_filter.sex.linked
Folder with the script and input data required for 'Standard' filtering regime.
filter.sex.linked_requirements
Folder with the script and input data required to replicate the analyses that investigated the minimum requirements for functions filter.sex.linked and infer.sex
filter.sex.linked_validation
Folder with the script and input data required to replicate the analyses that validated the results of function filter.sex.linked
Funding
Can mitochondrial and nuclear co-evolution drive climate adaptation? This project aims to reveal whether co-evolution between the mitochondrial genome of a wild bird and partner nuclear genes is causing the species to split into two forms, one adapted to inland environments and one to coastal conditions
Australian Research Council
Find out more...Evolution and role of neo-sex chromosomes in mitonuclear co-evolution
Australian Research Council
Find out more...