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Macquarie perch Macquaria australasica DArT genotypes for Lutz et al 2021 Evolutionary Applications

dataset
posted on 01.09.2021, 11:34 by Alexandra PavlovaAlexandra Pavlova, Paul Sunnucks, Maiko Lutz
Data used in the manuscript:

Lutz, M., Z. Tonkin, J. D. Yen, G. Johnson, B. Ingram, J. Sharley, J. Lyon, D. G. Chapple, P. Sunnucks, and A. Pavlova. 2021. Using multiple sources during reintroduction of a locally extinct population benefits survival and reproduction of an endangered freshwater fish. Evolutionary Applications 14:950-964. doi.org/10.1111/eva.13173


File “Report_DMacq19-4705_8_moreOrders_SNP_mapping_2.csv” is the genotyping file from Diversity Arrays Technology. It contains genotypes for 2672 Macquarie perch individuals, including those not used for this study.

File “Metadata.txt” explains content of columns and rows in the genotyping file.

File “Lutz_et_al_covariate_file.csv” is the covariate file used for manuscript (1) Lutz et al 2021. It comprises data on population, sex and capture year for each individual. Columns: id- individual identification, pop- population (Dart_F- Dartmouth female; Dart_M- Dartmouth male; Dart_U- Dartmouth individual of unknown sex; Yarr_F- Yarra female; Yarr_M- Yarra male; Yarr_U- Yarra individual of unknown sex; Ovens_2016, Ovens_2017 and Ovens_2018- individuals captured in the Ovens during the 2016, 2017 and 2018 monitoring, respectively; SnobsCreek- hatchery-produced individual born at Snobs Creek hatchery; dontuse- individual was not use in this study); sex- gender (M- male, F- female, U- unknown, #NA- not used in this study).



Funding

Australia Research Council Linkage Grant LP160100482

Department of Environment, Land, Water and Planning (DELWP, Victoria)

Diversity Arrays Technology

Zoos Victoria

Environment, Planning & Sustainable Development Directorate (ACT Government)

Department of Biodiversity, Conservation and Attractions (Western Australia)

Victorian Fisheries Authority

Holsworth Wildlife Research Endowment

History