Global Typhoid Genomics Consortium 2022 - Genome Assemblies

dataset

posted on 2023-02-09, 07:53 authored by Kathryn HoltKathryn Holt

Whole genome assemblies of Salmonella enterica serovar Typhi assembled for the Global Typhoid Genomics Consortium paper: "Global diversity and antimicrobial resistance of typhoid fever pathogens: insights from 13,000 Salmonella Typhi genomes" (BioRxiv, 2022).

Total n=13,000 genomes, each is gzipped fasta format and then grouped into tar balls based on genotype.

Genomes are listed in CSV file TGC_data.csv which includes source and quality information, accessions for raw reads, and genome-derived genotype and AMR variables.