Eltham copper butterfly <i>Paralucia pyrodiscus</i>: scoping genetic rescue

<p dir="ltr">This repository includes the data, text and supplementary material for the manuscript:</p><p dir="ltr">Roitman, M., Gardner, M.G., New, T.R., Nguyen, T.T.T., Roycroft, E.J., Sunnucks, P., Yen, A.L., Harrisson, K.A., 2017.<u> </u><a href="https://doi.org/10.1111/icad.12235" rel="noreferrer" target="_blank"><i><u>Assessing the scope for genetic rescue of an endangered butterfly: the case of the Eltham copper</u></i></a><u>. </u>Insect Conservation and Diversity 10, 399–414. </p><p><br></p><p dir="ltr"><b>Final version of the manuscript:</b></p><p dir="ltr">Roitman_etal_ICD_final.docx</p><p><br></p><p dir="ltr"><b>Supplementary Material for the manuscript:</b></p><p dir="ltr">icad12235-sup-0001-appendix.A.doc -- DNA extractions of larvae samples</p><p dir="ltr">icad12235-sup-0002-appendix.B.pdf -- Primer sequences</p><p dir="ltr">icad12235-sup-0003-appendix.C.doc -- Nuclear primer design</p><p dir="ltr">icad12235-sup-0004-appendix.D.pdf -- PCR conditions</p><p dir="ltr">icad12235-sup-0005-appendix.E.doc -- Summary of MIGRATE-N analysis</p><p dir="ltr">icad12235-sup-0006-appendix.F.doc -- Genetic diversity statistics</p><p dir="ltr">icad12235-sup-0007-appendix.G.doc -- Summary of *BEAST analysis in tree</p><p dir="ltr">form</p><p dir="ltr">icad12235-sup-0008-appendix.H.doc -- Summary of STRUCTURE analysis</p><p dir="ltr">based on all P. pyrodiscus samples</p><p dir="ltr">icad12235-sup-0009-appendix.I.pdf -- Sample information</p><p dir="ltr">icad12235-sup-0009-appendix.I Sample database in excel form.xls</p><p><br></p><p dir="ltr"><b>Genotypes for nuclear sequencing data and results of GenAlEx analyses:</b></p><p dir="ltr">Heterozygosity nuclear_KH.xlsx</p><p><br></p><p dir="ltr"><b>Mitochondrial sequencing data, in nexus format (‘traits’ are locations):</b></p><p dir="ltr">Concatenated CO1 ND5 mitochondria.nex</p><p dir="ltr">Nucleotide alignment CO1ND5_concatenated_traits.nex</p><p><br></p><p dir="ltr">Nucleotide alignment CO1_Ktrimmed.nex</p><p dir="ltr">Nucleotide alignment CO1_Ktrimmed_traits.nex</p><p><br></p><p dir="ltr">Nucleotide alignment ND5_Ktrimmed.nex</p><p dir="ltr">Nucleotide alignment ND5_Ktrimmed_traits.nex</p><p><br></p><p dir="ltr"><b>Phased nuclear sequences for five anonymous single copy nuclear loci, in nexus format:</b></p><p dir="ltr">63EA_phased.nex</p><p dir="ltr">A7D8_phased.nex</p><p dir="ltr">S5ZW_phased_updated.nex</p><p dir="ltr">O3W6_phased_updated.nex</p><p dir="ltr">Z5V8_phased.nex</p>