CaraVaN_xgboost_cardiac_utility.py (23.78 kB)

CaraVaN python script

Version 2 2021-07-27, 01:38

Version 1 2021-07-27, 00:39

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posted on 2021-07-27, 01:38 authored by Gulrez ChahalGulrez Chahal, mirana ramialison, Sonika TyagiSonika Tyagi

This is the CaraVaN script based on XGBoost method to prioritise potential pathogenic variants in Congenital heart disease and related heart diseases. This script is modification of ncER tool (https://github.com/TelentiLab/ncER_datasets) for cardiac utility.

Funding

Rotary Global Grant GG1637399

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Keywords

Congenital Heart Diseases heart disease bioinformatics analyses variant prioritization pipelines non-coding genomic sequences ARDC Data Retention Project RDSI Health Informatics Bioinformatics Bioinformatics Software

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CC BY 4.0

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